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  5. Aop_g12488

Aop_g12488 (SNX1, ATSNX1)


Aliases : SNX1, ATSNX1

Description : regulatory factor SNX1 of Retromer protein recycling complex & original description: none


Gene families : OG0003446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12488
Cluster HCCA: Cluster_314

Target Alias Description ECC score Gene Family Method Actions
Adi_g105073 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.02 OrthoFinder output from all 47 species
Dcu_g11051 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
LOC_Os01g64280.1 SNX1, ATSNX1,... component SNX1 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
Mp7g16810.1 SNX1, ATSNX1 component SNX1 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
Nbi_g06128 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Nbi_g21030 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Ppi_g40448 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Smo168332 SNX1, ATSNX1 Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
Solyc09g010130.4.1 SNX1, ATSNX1,... component SNX1 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
Spa_g00713 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Tin_g06008 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.04 OrthoFinder output from all 47 species
Zm00001e019193_P002 SNX1, ATSNX1,... component SNX1 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0032958 inositol phosphate biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001683 PX_dom 56 133
IPR015404 Vps5_C 162 392
No external refs found!