Description : component *(ARPF2) of ARPF2-ARRS1 complex & original description: none
Gene families : OG0006885 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006885_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Aop_g12213 | |
Cluster | HCCA: Cluster_283 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G23620 | No alias | Ribosomal RNA processing Brix domain protein | 0.07 | OrthoFinder output from all 47 species | |
Aev_g03783 | No alias | component *(ARPF2) of ARPF2-ARRS1 complex & original... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001003.36 | No alias | Ribosome production factor 2 homolog OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cre03.g197000 | No alias | Ribosome production factor 2 homolog OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01033782001 | No alias | Ribosome production factor 2 homolog OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os01g33030.1 | LOC_Os01g33030 | component ARPF2 of ARPF2-ARRS1 complex | 0.03 | OrthoFinder output from all 47 species | |
Mp4g01500.1 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g07801 | No alias | component *(ARPF2) of ARPF2-ARRS1 complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Pp3c4_19370V3.1 | Pp3c4_19370 | Ribosomal RNA processing Brix domain protein | 0.01 | OrthoFinder output from all 47 species | |
Smo73689 | No alias | Ribosome production factor 2 homolog OS=Oryza sativa... | 0.04 | OrthoFinder output from all 47 species | |
Solyc10g083600.2.1 | Solyc10g083600 | component ARPF2 of ARPF2-ARRS1 complex | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e032080_P001 | Zm00001e032080 | component ARPF2 of ARPF2-ARRS1 complex | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006364 | rRNA processing | IEA | Interproscan |
MF | GO:0019843 | rRNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | HCCA |
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006405 | RNA export from nucleus | IEP | HCCA |
BP | GO:0006406 | mRNA export from nucleus | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006801 | superoxide metabolic process | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
CC | GO:0008541 | proteasome regulatory particle, lid subcomplex | IEP | HCCA |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | HCCA |
CC | GO:0016272 | prefoldin complex | IEP | HCCA |
MF | GO:0016746 | acyltransferase activity | IEP | HCCA |
MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
BP | GO:0043248 | proteasome assembly | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0050657 | nucleic acid transport | IEP | HCCA |
BP | GO:0050658 | RNA transport | IEP | HCCA |
BP | GO:0051028 | mRNA transport | IEP | HCCA |
BP | GO:0051168 | nuclear export | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051236 | establishment of RNA localization | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007109 | Brix | 36 | 232 |
No external refs found! |