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  5. Aop_g08020

Aop_g08020


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08020
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Adi_g012590 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g114117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024689 No alias not classified & original description: CDS=239-2569 0.02 OrthoFinder output from all 47 species
Azfi_s0336.g065546 No alias not classified & original description: CDS=1-2493 0.03 OrthoFinder output from all 47 species
Cba_g57127 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.03 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.03 OrthoFinder output from all 47 species
Dac_g16300 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g23419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09268 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Len_g15440 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g01887 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g13290 EMB2279, EMB88 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10297 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006174 No alias not classified & original description: CDS=16-1263 0.04 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo441948 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.02 OrthoFinder output from all 47 species
Spa_g08291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49332 CRM3, HCF152 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003951 NAD+ kinase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006741 NADP biosynthetic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 433 530
IPR002885 Pentatricopeptide_repeat 203 250
IPR002885 Pentatricopeptide_repeat 299 347
IPR002885 Pentatricopeptide_repeat 369 430
No external refs found!