Lfl_g09029 (VALRS, TWN2)

Aliases : VALRS, TWN2

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none

Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g09029

Target	Alias	Description	ECC score	Gene Family Method
AT1G14610	VALRS, TWN2	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)	0.04	OrthoFinder output from all 47 species
Adi_g054739	VALRS, TWN2	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Als_g14687	VALRS, TWN2	EC_6.1 ligase forming carbon-oxygen bond & original...	0.05	OrthoFinder output from all 47 species
Als_g16555	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene57505.t1	VALRS, TWN2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.12G097300.1	VALRS, TWN2,...	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Cre07.g350500	EMB2247	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Dcu_g08489	VALRS, TWN2	valine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g09644	VALRS, TWN2	EC_6.1 ligase forming carbon-oxygen bond & original...	0.06	OrthoFinder output from all 47 species
Dcu_g21392	VALRS, TWN2	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01010632001	VALRS, TWN2	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
LOC_Os03g48850.1	VALRS, TWN2,...	valine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Solyc09g007540.3.1	VALRS, TWN2,...	valine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Spa_g12844	VALRS, TWN2	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Zm00001e010301_P002	VALRS, TWN2,...	valine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Zm00001e040160_P001	VALRS, TWN2,...	valine-tRNA ligase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	798	950
IPR002300	aa-tRNA-synth_Ia	133	753

External Links

No external refs found!

Lfl_g09029 (VALRS, TWN2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation