Aop_g01815 (AXR6, ATCUL1, CUL1)

Aliases : AXR6, ATCUL1, CUL1

Description : scaffold component *(CUL1) of SCF E3 ubiquitin ligase complexes & original description: none

Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g01815
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00258510	AXR6, ATCUL1,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Adi_g087062	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Adi_g116543	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Als_g52906	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ceric.27G015900.1	AXR6, ATCUL1,...	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ceric.28G004800.1	AXR6, ATCUL1,...	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Dcu_g04834	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
GSVIVT01010966001	AXR6, ATCUL1, CUL1	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01017738001	AXR6, ATCUL1, CUL1	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Gb_16689	AXR6, ATCUL1, CUL1	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	OrthoFinder output from all 47 species
LOC_Os05g05700.1	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	OrthoFinder output from all 47 species
Len_g08039	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Mp8g03110.1	AXR6, ATCUL1, CUL1	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	OrthoFinder output from all 47 species
Nbi_g04952	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ore_g30275	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Pir_g01372	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Smo173394	AXR6, ATCUL1, CUL1	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Solyc06g084520.3.1	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	OrthoFinder output from all 47 species
Tin_g04133	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquiTin ligase...	0.03	OrthoFinder output from all 47 species
Zm00001e027502_P001	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.03	OrthoFinder output from all 47 species
Zm00001e040431_P004	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004813	alanine-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0017196	N-terminal peptidyl-methionine acetylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018206	peptidyl-methionine modification	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
CC	GO:0031248	protein acetyltransferase complex	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031414	N-terminal protein acetyltransferase complex	IEP	HCCA
CC	GO:0031417	NatC complex	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
CC	GO:1902493	acetyltransferase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	15	647
IPR019559	Cullin_neddylation_domain	674	736

External Links

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Aop_g01815 (AXR6, ATCUL1, CUL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation