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  5. Lfl_g07399

Lfl_g07399


Description : trans-splicing factor *(PPR4) & original description: none


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g07399

Target Alias Description ECC score Gene Family Method Actions
AT5G04810 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g059076 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42769 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11599 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037201 No alias trans-splicing factor *(PPR4) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.23G051700.1 Ceric.23G051700 trans-splicing factor *(PPR4) & original description:... 0.08 OrthoFinder output from all 47 species
Dcu_g11762 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g58780.1 LOC_Os04g58780 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Len_g29490 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
MA_70567g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Mp1g25160.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.05 OrthoFinder output from all 47 species
Msp_g06326 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04509 No alias trans-splicing factor *(PPR4) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g08436 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09198 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g009730.4.1 Solyc04g009730 Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.06 OrthoFinder output from all 47 species
Spa_g27232 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 366 420
IPR033443 PPR_long 702 840
IPR000504 RRM_dom 200 272
IPR002885 Pentatricopeptide_repeat 651 682
IPR002885 Pentatricopeptide_repeat 584 633
IPR002885 Pentatricopeptide_repeat 514 562
IPR002885 Pentatricopeptide_repeat 445 493
No external refs found!