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  5. Lfl_g06016

Lfl_g06016


Description : not classified & original description: none


Gene families : OG0002839 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002839_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g06016

Target Alias Description ECC score Gene Family Method Actions
Adi_g022517 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07518 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09621 PDS3, PDS, PDE226 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19316 PDS3, PDS, PDE226 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03808 PDS3, PDS, PDE226 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene35673.t1 PDS3, PDS,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56803.t1 Aspi01Gene56803 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015979 No alias not classified & original description: CDS=212-1885 0.05 OrthoFinder output from all 47 species
Cba_g26743 PDS3, PDS, PDE226 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G017400.1 PDS3, PDS,... not classified & original description: pacid=50621794... 0.04 OrthoFinder output from all 47 species
Ceric.25G032300.1 Ceric.25G032300 not classified & original description: pacid=50594452... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000655.47 TZ, THI4, THI1 No description available 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001302.9 PDE181, ZDS, SPC1 No description available 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.51 No alias 15-cis-phytoene desaturase, chloroplastic/chromoplastic... 0.06 OrthoFinder output from all 47 species
Cre13.g587500 No alias Phytoene dehydrogenase, chloroplastic/chromoplastic... 0.02 OrthoFinder output from all 47 species
Dac_g13672 PDS3, PDS, PDE226 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g09245 PDS3, PDS, PDE226 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g01530 PDS3, PDS, PDE226 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_06069 LDL3 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g47290.2 LOC_Os04g47290 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g13429 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10428599g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_135340g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_580945g0010 LDL3 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp1g18160.1 PDS3, PDS, PDE226 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g10094 PDS3, PDS, PDE226 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03292 PDS3, PDS, PDE226 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g56449 PDS3, PDS, PDE226 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g05186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo74261 PDS3, PDS, PDE226 15-cis-phytoene desaturase, chloroplastic/chromoplastic... 0.11 OrthoFinder output from all 47 species
Tin_g13831 PDS3, PDS, PDE226 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007260_P002 Zm00001e007260 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 57 509
No external refs found!