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  5. Lfl_g04234

Lfl_g04234


Description : not classified & original description: none


Gene families : OG0008626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00260200 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT1G12800 No alias Nucleic acid-binding, OB-fold-like protein 0.05 OrthoFinder output from all 47 species
Adi_g058535 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g12369 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g03977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16052 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04877 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0028.g023868 No alias not classified & original description: CDS=112-915 0.03 OrthoFinder output from all 47 species
Cba_g07749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G040000.1 Ceric.34G040000 not classified & original description: pacid=50623148... 0.08 OrthoFinder output from all 47 species
Dcu_g09585 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g11903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02856 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019806001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os02g02390.1 LOC_Os02g02390 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g36057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g11640.1 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Nbi_g05908 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g33654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016351 No alias delta-12/delta-15 fatty acid desaturase & original... 0.03 OrthoFinder output from all 47 species
Sam_g17254 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc08g007950.3.1 Solyc08g007950 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g12402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013455_P001 Zm00001e013455 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 968 1039
No external refs found!