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  5. Ala_g25081

Ala_g25081


Description : nucleocytoplasmic transport karyopherin *(MOS14) & original description: none


Gene families : OG0004537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g25081
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00115330 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Adi_g024083 No alias nucleocytoplasmic transport karyopherin *(MOS14) &... 0.03 OrthoFinder output from all 47 species
Aev_g24041 No alias nucleocytoplasmic transport karyopherin *(MOS14) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0030.g024383 No alias nucleocytoplasmic transport karyopherin *(MOS14) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000970.1 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g43936 No alias nucleocytoplasmic transport karyopherin *(MOS14) &... 0.04 OrthoFinder output from all 47 species
LOC_Os10g33770.1 LOC_Os10g33770 TNPO3 nucleocytoplasmic transport karyopherin 0.06 OrthoFinder output from all 47 species
Lfl_g36168 No alias nucleocytoplasmic transport karyopherin *(MOS14) &... 0.03 OrthoFinder output from all 47 species
MA_247862g0010 No alias TNPO3 nucleocytoplasmic transport karyopherin 0.02 OrthoFinder output from all 47 species
MA_87137g0010 No alias TNPO3 nucleocytoplasmic transport karyopherin 0.04 OrthoFinder output from all 47 species
Mp8g15200.1 No alias TNPO3 nucleocytoplasmic transport karyopherin 0.04 OrthoFinder output from all 47 species
Pp3c11_11570V3.1 Pp3c11_11570 ARM repeat superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g22253 No alias nucleocytoplasmic transport karyopherin *(MOS14) &... 0.02 OrthoFinder output from all 47 species
Smo100270 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Zm00001e004571_P001 Zm00001e004571 TNPO3 nucleocytoplasmic transport karyopherin 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0031267 small GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 62 126
IPR013598 Exportin-1/Importin-b-like 135 279
No external refs found!