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  5. Lfl_g02407

Lfl_g02407 (ELF8, VIP6)


Aliases : ELF8, VIP6

Description : component *(VIP6/CTR9) of PAF1C transcription initiation and elongation complex & original description: none


Gene families : OG0004869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004869_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02407

Target Alias Description ECC score Gene Family Method Actions
AT2G06210 ELF8, VIP6 binding 0.04 OrthoFinder output from all 47 species
Als_g28871 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Aop_g37890 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ceric.21G032900.1 Ceric.21G032900 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Cre03.g189605 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dac_g14157 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Ehy_g06197 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
GSVIVT01015096001 ELF8, VIP6 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Gb_17412 ELF8, VIP6 component VIP6/CTR9 of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
LOC_Os07g29360.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.05 OrthoFinder output from all 47 species
Mp5g24200.1 ELF8, VIP6 component VIP6/CTR9 of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Pir_g05576 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ppi_g48264 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Solyc07g041510.3.1 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Solyc07g041550.2.1 Solyc07g041550 component VIP6/CTR9 of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Tin_g10977 ELF8, VIP6 component *(VIP6/CTR9) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Zm00001e007203_P003 ELF8, VIP6,... component VIP6/CTR9 of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 347 376
IPR019734 TPR_repeat 450 476
IPR019734 TPR_repeat 716 742
IPR019734 TPR_repeat 308 332
No external refs found!