Lfl_g02187 (ATCSTF77, CSTF77)


Aliases : ATCSTF77, CSTF77

Description : component *(CstF77/Rna14) of Cleavage Stimulatory Factor (CstF) complex & original description: none


Gene families : OG0004932 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004932_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00084550 ATCSTF77,... RNA processing.RNA 3-end polyadenylation.Cleavage... 0.02 OrthoFinder output from all 47 species
Adi_g057301 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from all 47 species
Ala_g22054 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.06 OrthoFinder output from all 47 species
Als_g07450 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.04 OrthoFinder output from all 47 species
Aspi01Gene72560.t1 ATCSTF77,... component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.03 OrthoFinder output from all 47 species
Cba_g08538 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.68 ATCSTF77, CSTF77 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.01 OrthoFinder output from all 47 species
Cre12.g506050 ATCSTF77, CSTF77 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.03 OrthoFinder output from all 47 species
Dcu_g23739 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.04 OrthoFinder output from all 47 species
LOC_Os12g38380.1 ATCSTF77,... component CstF77/Rna14 of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from all 47 species
Len_g19970 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.03 OrthoFinder output from all 47 species
Mp1g21890.1 ATCSTF77, CSTF77 component CstF77/Rna14 of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from all 47 species
Pnu_g19671 ATCSTF77, CSTF77 component *(CstF77/Rna14) of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from all 47 species
Zm00001e031579_P002 ATCSTF77,... component CstF77/Rna14 of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 383 709
No external refs found!