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  5. Lfl_g02031

Lfl_g02031


Description : not classified & original description: none


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02031

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00234440 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g075755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g21139 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32208 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g41657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g62066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G026000.1 Ceric.33G026000 not classified & original description: pacid=50607594... 0.03 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01023998001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os10g30370.1 LOC_Os10g30370 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g58331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g15339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g22657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e004710_P005 Zm00001e004710 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e012773_P005 Zm00001e012773 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 379 489
IPR000504 RRM_dom 199 257
IPR000504 RRM_dom 496 546
IPR000504 RRM_dom 292 362
No external refs found!