Ala_g16236 (UBP12)

Aliases : UBP12

Description : deubiquitinase *(UBP12-13) & original description: none

Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g16236
Cluster	HCCA: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	UBP13,...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
AT3G11910	UBP13	ubiquitin-specific protease 13	0.11	OrthoFinder output from all 47 species
AT5G06600	UBP12	ubiquitin-specific protease 12	0.09	OrthoFinder output from all 47 species
Adi_g022452	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g060998	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g21287	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g11910	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.09	OrthoFinder output from all 47 species
Als_g18908	UBP13	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g29323	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.09	OrthoFinder output from all 47 species
Als_g32969	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.09	OrthoFinder output from all 47 species
Aob_g04496	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g20270	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.12	OrthoFinder output from all 47 species
Aop_g09168	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene13913.t1	UBP12, Aspi01Gene13913	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene19498.t1	UBP13, Aspi01Gene19498	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53263.t2	UBP12, Aspi01Gene53263	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.13G025300.1	UBP13, Ceric.13G025300	deubiquitinase *(UBP12-13) & original description:...	0.1	OrthoFinder output from all 47 species
Ceric.14G040100.1	UBP12, Ceric.14G040100	deubiquitinase *(UBP12-13) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.24G037500.1	UBP12, Ceric.24G037500	deubiquitinase *(UBP12-13) & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.46	UBP12	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g06495	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g08406	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08947	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g46962	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g08217	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g25656	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g18754	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01022498001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.05	OrthoFinder output from all 47 species
GSVIVT01034603001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.08	OrthoFinder output from all 47 species
GSVIVT01037528001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.04	OrthoFinder output from all 47 species
Gb_02820	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Gb_04866	UBP13	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Gb_34568	UBP13	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species
LOC_Os01g56490.1	UBP13, LOC_Os01g56490	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species
LOC_Os07g06950.1	UBP12, LOC_Os07g06950	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
LOC_Os11g36470.1	UBP13, LOC_Os11g36470	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.07	OrthoFinder output from all 47 species
LOC_Os12g30540.1	UBP12, LOC_Os12g30540	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.09	OrthoFinder output from all 47 species
Len_g23299	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g05026	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.09	OrthoFinder output from all 47 species
Lfl_g40373	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10426331g0010	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
MA_10427483g0010	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	OrthoFinder output from all 47 species
MA_10427483g0020	UBP13	deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
MA_10428769g0010	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
MA_75085g0010	UBP13	deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
Mp3g15430.1	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
Msp_g15171	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g40484	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01064	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16380	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16929	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18625	No alias	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Smo444302	UBP12	Protein degradation.peptidase families.cysteine-type...	0.02	OrthoFinder output from all 47 species
Solyc10g081610.2.1	UBP12, Solyc10g081610	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	OrthoFinder output from all 47 species
Solyc11g006320.2.1	UBP12, Solyc11g006320	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.07	OrthoFinder output from all 47 species
Solyc11g071700.2.1	UBP12, Solyc11g071700	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Spa_g06287	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29818	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e032871_P004	UBP12, Zm00001e032871	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.08	OrthoFinder output from all 47 species
Zm00001e039540_P003	UBP12, Zm00001e039540	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003972	RNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008452	RNA ligase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029346	USP_C	886	1096
IPR002083	MATH/TRAF_dom	56	176
IPR001394	Peptidase_C19_UCH	194	515
IPR024729	USP7_ICP0-binding_dom	619	872

External Links

No external refs found!

Ala_g16236 (UBP12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation