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  5. Ala_g13690

Ala_g13690 (ATSS3, SS3)


Aliases : ATSS3, SS3

Description : starch synthase *(SS3) & original description: none


Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g13690

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00214840 ATSS4, SS4,... Probable starch synthase 4, chloroplastic/amyloplastic... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00039610 evm_27.TU.AmTr_v1... Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
AT4G18240 ATSS4, SS4, SSIV starch synthase 4 0.03 OrthoFinder output from all 47 species
Aob_g02168 ATSS4, SS4, SSIV not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11092 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007652 ATSS3, SS3 starch synthase *(SS3) & original description: CDS=201-2645 0.03 OrthoFinder output from all 47 species
Cba_g33306 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G020900.1 ATSS3, SS3,... starch synthase *(SS3) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g08981 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g14950 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os02g56320.1 LOC_Os02g56320 Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
Mp2g08030.1 ATSS4, SS4, SSIV Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
Nbi_g34784 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02313 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14771 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27766 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c9_14980V3.1 ATSS4, SS4,... starch synthase 4 0.02 OrthoFinder output from all 47 species
Ppi_g39876 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g43473 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12030 No alias starch synthase *(SS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g071040.3.1 ATSS4, SS4,... starch synthase (SSIV) 0.05 OrthoFinder output from all 47 species
Zm00001e027473_P001 ATSS4, SS4,... starch synthase (SSIV) 0.05 OrthoFinder output from all 47 species
Zm00001e041682_P002 ATSS3, SS3,... starch synthase (SSIII) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005085 CBM25 473 553
IPR005085 CBM25 647 733
IPR005085 CBM25 809 896
IPR013534 Starch_synth_cat_dom 907 1095
No external refs found!