Ala_g06738 (NEF1)


Aliases : NEF1

Description : exine patterning factor *(NEF1) & original description: none


Gene families : OG0004275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g06738
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00233120 NEF1,... Cell wall.sporopollenin.exine wall formation.NEF1 exine... 0.04 OrthoFinder output from all 47 species
AT5G13390 NEF1 no exine formation 1 0.02 OrthoFinder output from all 47 species
Adi_g087227 NEF1 exine patterning factor *(NEF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03387 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044904 NEF1 exine patterning factor *(NEF1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z076600.1 NEF1, Ceric.1Z076600 exine patterning factor *(NEF1) & original description:... 0.06 OrthoFinder output from all 47 species
Cre01.g018050 NEF1 Cell wall.sporopollenin.exine wall formation.NEF1 exine... 0.03 OrthoFinder output from all 47 species
Dcu_g04975 NEF1 exine patterning factor *(NEF1) & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g04037 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_19950 NEF1 exine patterning factor (NEF1) 0.08 OrthoFinder output from all 47 species
LOC_Os11g32470.1 NEF1, LOC_Os11g32470 exine patterning factor (NEF1) 0.06 OrthoFinder output from all 47 species
Lfl_g02354 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_302207g0010 NEF1 exine patterning factor (NEF1) 0.07 OrthoFinder output from all 47 species
Mp1g01090.1 NEF1 exine patterning factor (NEF1) 0.05 OrthoFinder output from all 47 species
Pir_g10459 NEF1 exine patterning factor *(NEF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02407 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g033282.1.1 NEF1, Solyc11g033282 exine patterning factor (NEF1) 0.07 OrthoFinder output from all 47 species
Spa_g15321 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!