Msp_g47300 (54CP, SRP54CP, CPSRP54, FFC)

Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none

Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g47300
Cluster	HCCA: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
AT5G03940	54CP, SRP54CP,...	chloroplast signal recognition particle 54 kDa subunit	0.04	OrthoFinder output from all 47 species
Aev_g05995	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Aob_g13062	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Aspi01Gene03016.t1	54CP, SRP54CP,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G060800.1	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
Cre11.g479750	54CP, SRP54CP,...	Protein translocation.chloroplast.thylakoid membrane SRP...	0.05	OrthoFinder output from all 47 species
Dac_g21514	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
Dde_g10157	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 47 species
GSVIVT01033862001	54CP, SRP54CP,...	Protein translocation.chloroplast.thylakoid membrane SRP...	0.02	OrthoFinder output from all 47 species
LOC_Os11g05552.1	54CP, SRP54CP,...	Signal recognition particle 54 kDa protein,...	0.04	OrthoFinder output from all 47 species
LOC_Os11g05556.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.03	OrthoFinder output from all 47 species
Lfl_g04096	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 47 species
MA_357296g0010	54CP, SRP54CP,...	Signal recognition particle 54 kDa protein,...	0.02	OrthoFinder output from all 47 species
Mp1g05670.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.02	OrthoFinder output from all 47 species
Nbi_g12082	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.07	OrthoFinder output from all 47 species
Solyc09g009940.3.1	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.07	OrthoFinder output from all 47 species
Zm00001e024147_P003	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.05	OrthoFinder output from all 47 species
Zm00001e039381_P004	54CP, SRP54CP,...	component cpSRP54 of thylakoid membrane SRP insertion system	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000897	SRP54_GTPase_dom	215	410
IPR004125	Signal_recog_particle_SRP54_M	441	540
IPR013822	Signal_recog_particl_SRP54_hlx	120	197

External Links

No external refs found!

Msp_g47300 (54CP, SRP54CP, CPSRP54, FFC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation