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  5. Msp_g24783

Msp_g24783


Description : not classified & original description: none


Gene families : OG0005186 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005186_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g24783
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Ala_g22613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G040800.1 Ceric.34G040800 not classified & original description: pacid=50623140... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.74 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre12.g508350 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g06538 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01031157001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os01g24090.1 LOC_Os01g24090 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g19670 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g37022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_375561g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g22870.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g12159 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006313 No alias not classified & original description: CDS=1875-2780 0.02 OrthoFinder output from all 47 species
Sam_g16550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo410377 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g49857 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!