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  5. Msp_g12620

Msp_g12620 (ATHM2)


Aliases : ATHM2

Description : thioredoxin *(TRX-M) & original description: none


Gene families : OG0001012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g12620

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00016000 ATHM2,... Redox homeostasis.chloroplast redox homeostasis.M-type... 0.11 OrthoFinder output from all 47 species
AT1G03680 ATHM1, THM1, TRX-M1, ATM1 thioredoxin M-type 1 0.06 OrthoFinder output from all 47 species
AT3G15360 ATHM4, TRX-M4, ATM4 thioredoxin M-type 4 0.04 OrthoFinder output from all 47 species
Adi_g086491 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g107265 ATHM4, TRX-M4, ATM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32022 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09870 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g23908 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12040 ATHM2 thioredoxin *(TRX-M) & original description: none 0.14 OrthoFinder output from all 47 species
Als_g21943 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g48830 ATHM2 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g58971 ATHM2 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g04875 ATHM2 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g08794 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24176 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g39548 ATHM2 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Aop_g11048 ATHM2 thioredoxin *(TRX-M) & original description: none 0.14 OrthoFinder output from all 47 species
Aspi01Gene35886.t2 ATHM2, Aspi01Gene35886 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Azfi_s0087.g042425 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=1-594 0.03 OrthoFinder output from all 47 species
Azfi_s0110.g045543 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=236-865 0.05 OrthoFinder output from all 47 species
Azfi_s0144.g051537 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=12-806 0.03 OrthoFinder output from all 47 species
Cba_g19197 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g23725 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Ceric.09G062900.1 ATHM2, Ceric.09G062900 thioredoxin *(TRX-M) & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.16G010700.1 ATHM4, TRX-M4,... thioredoxin *(TRX-M) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G041700.1 ATHM2, Ceric.23G041700 thioredoxin *(TRX-M) & original description:... 0.12 OrthoFinder output from all 47 species
Ceric.30G036000.1 ATHM1, THM1,... thioredoxin *(TRX-M) & original description:... 0.16 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001477.10 ATHM4, TRX-M4, ATM4 Redox homeostasis.chloroplast redox homeostasis.X-type... 0.02 OrthoFinder output from all 47 species
Dac_g01349 ATHM2 thioredoxin *(TRX-M) & original description: none 0.16 OrthoFinder output from all 47 species
Dcu_g06755 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14399 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21277 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g43031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49300 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02608 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g23261 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g01752 ATHM1, THM1, TRX-M1, ATM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03185 ATHM2 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g08153 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09639 ATHM2 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010012001 ATHM4, TRX-M4, ATM4 Redox homeostasis.chloroplast redox homeostasis.M-type... 0.13 OrthoFinder output from all 47 species
Gb_00914 ATHM2 M-type thioredoxin 0.03 OrthoFinder output from all 47 species
Gb_31181 ATHM2 M-type thioredoxin 0.08 OrthoFinder output from all 47 species
LOC_Os12g08730.1 ATHM2, LOC_Os12g08730 M-type thioredoxin 0.05 OrthoFinder output from all 47 species
Len_g07374 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g09823 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Len_g16078 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g21827 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19591 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
MA_474303g0010 ATHM2 M-type thioredoxin 0.06 OrthoFinder output from all 47 species
Mp4g18950.1 ATHM1, THM1, TRX-M1, ATM1 M-type thioredoxin 0.15 OrthoFinder output from all 47 species
Ore_g10092 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28088 ATHM2 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01815 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g10112 ATHM2 thioredoxin *(TRX-M) & original description: none 0.15 OrthoFinder output from all 47 species
Pnu_g10809 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c25_2880V3.1 ATHM1, THM1,... thioredoxin M-type 1 0.03 OrthoFinder output from all 47 species
Ppi_g02691 ATHM2 thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g22064 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g07636 No alias thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Sam_g07637 No alias thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g24018 No alias thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Solyc07g063190.3.1 ATHM4, TRX-M4,... M-type thioredoxin 0.02 OrthoFinder output from all 47 species
Solyc10g006970.3.1 ATHM4, TRX-M4,... M-type thioredoxin 0.08 OrthoFinder output from all 47 species
Solyc12g013810.2.1 ATHM4, TRX-M4,... M-type thioredoxin 0.12 OrthoFinder output from all 47 species
Spa_g06831 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06832 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06833 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14111 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19071 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g52025 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Tin_g00552 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Zm00001e018385_P001 ATHM4, TRX-M4,... M-type thioredoxin 0.09 OrthoFinder output from all 47 species
Zm00001e039586_P001 ATHM2, Zm00001e039586 M-type thioredoxin 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 86 183
No external refs found!