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  5. Msp_g02098

Msp_g02098


Description : not classified & original description: none


Gene families : OG0006888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g02098
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00245550 evm_27.TU.AmTr_v1... Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Aev_g05515 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09081 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0225.g058913 No alias not classified & original description: CDS=1-1656 0.04 OrthoFinder output from all 47 species
Cba_g06579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15964 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g01970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07655 No alias Regulator of nonsense transcripts 1 homolog... 0.07 OrthoFinder output from all 47 species
LOC_Os02g47560.1 LOC_Os02g47560 Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
Lfl_g36332 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10434072g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_10435849g0020 No alias Regulator of nonsense transcripts 1 homolog... 0.06 OrthoFinder output from all 47 species
MA_10435849g0030 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g08978 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g36707 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09516 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 749 953
IPR041677 DNA2/NAM7_AAA_11 524 740
No external refs found!