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  5. Tin_g04533

Tin_g04533 (VPS4, SKD1, ATSKD1)


Aliases : VPS4, SKD1, ATSKD1

Description : EC_3.6 hydrolase acTing on acid anhydride & original description: none


Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04533

Target Alias Description ECC score Gene Family Method Actions
Aob_g06574 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G022900.1 VPS4, SKD1,... EC_3.6 hydrolase acting on acid anhydride & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001126.11 VPS4, SKD1, ATSKD1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1... 0.02 OrthoFinder output from all 47 species
Ehy_g13757 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Gb_14760 VPS4, SKD1, ATSKD1 ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.02 OrthoFinder output from all 47 species
LOC_Os01g04814.1 VPS4, SKD1,... ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Len_g23204 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.03 OrthoFinder output from all 47 species
Mp8g01610.1 VPS4, SKD1, ATSKD1 ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Pir_g01300 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.04 OrthoFinder output from all 47 species
Pnu_g06021 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0264.g026926 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Sam_g37514 No alias EC_3.6 hydrolase acting on acid anhydride & original... 0.05 OrthoFinder output from all 47 species
Solyc11g067240.2.1 VPS4, SKD1,... ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.05 OrthoFinder output from all 47 species
Zm00001e016954_P004 VPS4, SKD1,... ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Zm00001e025779_P001 VPS4, SKD1,... ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR015415 Vps4_C 374 438
IPR041569 AAA_lid_3 325 358
IPR003959 ATPase_AAA_core 171 300
IPR007330 MIT_dom 8 70
No external refs found!