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  5. Pir_g01571

Pir_g01571


Description : regulatory component *(RPN7) of 26S proteasome & original description: none


Gene families : OG0004513 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01571

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00246340 evm_27.TU.AmTr_v1... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Adi_g014551 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ala_g01282 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g00533 No alias regulatory component *(RPN7) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cba_g10280 No alias regulatory component *(RPN7) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.75 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Cre13.g581450 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Dcu_g08722 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
LOC_Os04g40850.1 LOC_Os04g40850 regulatory component RPN7 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Lfl_g06054 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002954 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g16686 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g50785 No alias regulatory component *(RPN7) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e007775_P001 Zm00001e007775 regulatory component RPN7 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Zm00001e015028_P002 Zm00001e015028 regulatory component RPN7 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR045135 Rpn7_N 63 236
IPR000717 PCI_dom 253 354
No external refs found!