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  5. Len_g20241

Len_g20241 (RAP2.2)


Aliases : RAP2.2

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00185480 ERF-1, ATERF-1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00099p00122430 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00111p00113030 ERF5, ATERF-5,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00112550 ERF72, EBP,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AT1G06160 ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 0.03 OrthoFinder output from all 47 species
AT2G25820 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g25437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38509 WIN1, SHN1 subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04116 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Aob_g26090 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07384 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08500.t1 ATERF3, ERF3,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g11441 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.13G021800.1 ERF-1, ATERF-1,... subgroup ERF-IX transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cre08.g364400 RAP2.2 No description available 0.02 OrthoFinder output from all 47 species
Dde_g22327 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Ehy_g11833 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ehy_g25390 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
GSVIVT01011465001 RAP2.11 External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
GSVIVT01034563001 ERF110 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
Gb_01212 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Gb_12965 ERF110 Ethylene-responsive transcription factor ABR1... 0.03 OrthoFinder output from all 47 species
Gb_26739 DREB26 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g58420.1 ATERF4, RAP2.5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os03g64260.1 ERF1, ATERF1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os04g32620.1 Rap2.6L, LOC_Os04g32620 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os09g11480.2 RAP2.2, LOC_Os09g11480 Ethylene-responsive transcription factor ERF112... 0.03 OrthoFinder output from all 47 species
Lfl_g31233 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
MA_10274g0010 Rap2.6L transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
MA_84578g0010 HRE1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_8552524g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Mp1g20040.1 ATERF4, RAP2.5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Mp5g01050.1 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Mp7g00860.1 ABI4, SAN5,... transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Ore_g06505 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Ore_g20838 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Pir_g09597 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31214 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Pir_g37433 ATERF13, ERF13, EREBP subgroup ERF-IX transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10528 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13205 No alias subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g14872 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Pnu_g33218 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g090770.1.1 ERF110, Solyc02g090770 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc02g093130.3.1 DEAR3, Solyc02g093130 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc04g054910.4.1 Solyc04g054910 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc06g054630.3.1 Solyc06g054630 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Spa_g09541 ORA47 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g13578 ERF110 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Spa_g26845 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g42439 RAP2.9, DEAR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006692_P001 Zm00001e006692 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Zm00001e006753_P003 RAP2.9, DEAR5,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e007332_P001 Zm00001e007332 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e016064_P001 RAP2.2, Zm00001e016064 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e025840_P001 DREB2A, DREB2,... transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Zm00001e030279_P001 ATERF3, ERF3,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e033965_P001 RAP2.4, Zm00001e033965 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 107 155
No external refs found!