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  5. Len_g16087

Len_g16087 (CSB3, CLB4, GCPE, HDS, ISPG)


Aliases : CSB3, CLB4, GCPE, HDS, ISPG

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase & original description: none


Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g16087
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00057810 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.04 OrthoFinder output from all 47 species
AT5G60600 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
Cba_g22353 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Cre12.g490350 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.03 OrthoFinder output from all 47 species
Dac_g01725 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.04 OrthoFinder output from all 47 species
GSVIVT01025182001 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.02 OrthoFinder output from all 47 species
Gb_01895 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
Lfl_g05647 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Pir_g09734 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.04 OrthoFinder output from all 47 species
Smo149035 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.02 OrthoFinder output from all 47 species
Zm00001e015046_P001 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004588 IspG_bac-typ 88 729
No external refs found!