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  5. Len_g13850

Len_g13850


Description : not classified & original description: none


Gene families : OG0005584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g13850

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00085200 evm_27.TU.AmTr_v1... Probable plastid-lipid-associated protein 12,... 0.02 OrthoFinder output from all 47 species
AT1G51110 No alias Plastid-lipid associated protein PAP / fibrillin family protein 0.04 OrthoFinder output from all 47 species
Adi_g006512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01024 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g11820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25037.t1 Aspi01Gene25037 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G084800.1 Ceric.18G084800 not classified & original description: pacid=50622462... 0.03 OrthoFinder output from all 47 species
Cre03.g176350 No alias Probable plastid-lipid-associated protein 12,... 0.03 OrthoFinder output from all 47 species
Dac_g13863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04559 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g19599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os07g28790.1 LOC_Os07g28790 Probable plastid-lipid-associated protein 12,... 0.03 OrthoFinder output from all 47 species
Mp1g23400.1 No alias Probable plastid-lipid-associated protein 12,... 0.06 OrthoFinder output from all 47 species
Msp_g48231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26346 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g45226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31225 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10823 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo431022 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc01g006330.4.1 Solyc01g006330 Probable plastid-lipid-associated protein 12,... 0.03 OrthoFinder output from all 47 species
Tin_g09335 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e034859_P002 Zm00001e034859 Probable plastid-lipid-associated protein 12,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR006843 PAP/fibrillin_dom 96 274
IPR006843 PAP/fibrillin_dom 291 368
No external refs found!