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  5. Len_g13429

Len_g13429


Description : not classified & original description: none


Gene families : OG0002839 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g13429

Target Alias Description ECC score Gene Family Method Actions
Adi_g022517 PDS3, PDS, PDE226 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g19734 PDS3, PDS, PDE226 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07518 PDS3, PDS, PDE226 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g19316 PDS3, PDS, PDE226 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03808 PDS3, PDS, PDE226 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56802.t1 Aspi01Gene56802 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g015979 No alias not classified & original description: CDS=212-1885 0.04 OrthoFinder output from all 47 species
Cba_g26743 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.18G017400.1 PDS3, PDS,... not classified & original description: pacid=50621794... 0.05 OrthoFinder output from all 47 species
Ceric.25G032300.1 Ceric.25G032300 not classified & original description: pacid=50594452... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000655.47 TZ, THI4, THI1 No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001302.9 PDE181, ZDS, SPC1 No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.51 No alias 15-cis-phytoene desaturase, chloroplastic/chromoplastic... 0.02 OrthoFinder output from all 47 species
Dac_g13672 PDS3, PDS, PDE226 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g28832 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g09245 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g01530 PDS3, PDS, PDE226 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g05913 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os04g47290.2 LOC_Os04g47290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g06016 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g34904 PDS3, PDS, PDE226 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g18160.1 PDS3, PDS, PDE226 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g10094 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03292 PDS3, PDS, PDE226 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g05186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo74261 PDS3, PDS, PDE226 15-cis-phytoene desaturase, chloroplastic/chromoplastic... 0.05 OrthoFinder output from all 47 species
Spa_g29749 PDS3, PDS, PDE226 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13831 PDS3, PDS, PDE226 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 63 503
No external refs found!