Nbi_g07455

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none

Gene families : OG0001675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001675_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g07455

Target	Alias	Description	ECC score	Gene Family Method
Adi_g076092	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Aev_g02454	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g04523	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021537.23	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cre06.g273300	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Cre10.g421600	EMB2761	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Dac_g07086	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Dde_g43823	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.05	OrthoFinder output from all 47 species
LOC_Os08g19850.1	LOC_Os08g19850	threonine-tRNA ligase	0.02	OrthoFinder output from all 47 species
MA_10434093g0010	No alias	threonine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Mp1g23020.1	No alias	threonine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Pir_g05250	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Sam_g12652	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Smo130418	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Solyc07g048080.4.1	EMB2761, Solyc07g048080	threonine-tRNA ligase	0.04	OrthoFinder output from all 47 species
Spa_g05753	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Spa_g15756	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Tin_g28822	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.05	OrthoFinder output from all 47 species
Zm00001e004544_P001	Zm00001e004544	threonine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Zm00001e012332_P002	Zm00001e012332	threonine-tRNA ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004814	arginine-tRNA ligase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006553	lysine metabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009085	lysine biosynthetic process	IEP	HCCA
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046451	diaminopimelate metabolic process	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004095	TGS	107	165
IPR002314	aa-tRNA-synt_IIb	422	633
IPR004154	Anticodon-bd	645	734
IPR012947	tRNA_SAD	274	323

External Links

No external refs found!

Nbi_g07455

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation