Nbi_g04325 (GCH, ATGCH, RFD1, ATRIBA1)

Aliases : GCH, ATGCH, RFD1, ATRIBA1

Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & original description: none

Gene families : OG0001684 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001684_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04325

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00145p00064330	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase...	0.03	OrthoFinder output from all 47 species
AT2G22450	No alias	riboflavin biosynthesis protein, putative	0.04	OrthoFinder output from all 47 species
AT5G59750	No alias	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II	0.06	OrthoFinder output from all 47 species
Adi_g013021	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.04	OrthoFinder output from all 47 species
Cre14.g620350	GCH, ATGCH, RFD1, ATRIBA1	Probable bifunctional riboflavin biosynthesis protein...	0.02	OrthoFinder output from all 47 species
Dac_g12652	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.04	OrthoFinder output from all 47 species
Dde_g13277	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g14342	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.05	OrthoFinder output from all 47 species
GSVIVT01003433001	GCH, ATGCH, RFD1, ATRIBA1	Coenzyme metabolism.FMN/FAD biosynthesis.bifunctional...	0.04	OrthoFinder output from all 47 species
GSVIVT01025042001	No alias	Monofunctional riboflavin biosynthesis protein RIBA 3,...	0.06	OrthoFinder output from all 47 species
Gb_31656	GCH, ATGCH, RFD1, ATRIBA1	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.04	OrthoFinder output from all 47 species
LOC_Os05g38570.1	LOC_Os05g38570	Probable monofunctional riboflavin biosynthesis protein...	0.02	OrthoFinder output from all 47 species
Ore_g07401	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.04	OrthoFinder output from all 47 species
Pir_g10851	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Solyc11g010300.2.1	GCH, ATGCH,...	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.04	OrthoFinder output from all 47 species
Solyc11g073160.3.1	Solyc11g073160	Monofunctional riboflavin biosynthesis protein RIBA 3,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004813	alanine-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032677	GTP_cyclohydro_II	360	525
IPR000422	DHBP_synthase_RibB	156	349

External Links

No external refs found!

Nbi_g04325 (GCH, ATGCH, RFD1, ATRIBA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation