Nbi_g03405

Description : component *(uS5c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006947 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006947_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g03405

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00160p00027870	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT2G33800	No alias	Ribosomal protein S5 family protein	0.15	OrthoFinder output from all 47 species
Aev_g08558	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g09860	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Aob_g01160	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g08706	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aspi01Gene14983.t1	Aspi01Gene14983	component *(uS5c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0164.g054257	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.31G051100.1	Ceric.31G051100	component *(uS5c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cre16.g659950	No alias	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
Dcu_g02392	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g01276	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g02229	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01021083001	No alias	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
Gb_10529	No alias	component psRPS5 of small ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
LOC_Os03g34040.1	LOC_Os03g34040	component psRPS5 of small ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Lfl_g06469	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
MA_10435489g0010	No alias	component psRPS5 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
MA_10435489g0020	No alias	component psRPS5 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Mp8g10330.1	No alias	component psRPS5 of small ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species
Msp_g10187	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ore_g26045	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g26046	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pir_g02168	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pnu_g00429	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g02748	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000229	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Sam_g15053	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Solyc02g077990.3.1	Solyc02g077990	component psRPS5 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Spa_g00297	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Tin_g14998	No alias	component *(uS5c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e004331_P004	Zm00001e004331	component psRPS5 of small ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004827	proline-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	195	265
IPR013810	Ribosomal_S5_N	118	182

External Links

No external refs found!

Nbi_g03405

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation