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  5. Nbi_g02729

Nbi_g02729 (PMDH1)


Aliases : PMDH1

Description : peroxisomal NAD-dependent malate dehydrogenase & original description: none


Gene families : OG0000664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02729
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AT1G53240 mMDH1 Lactate/malate dehydrogenase family protein 0.02 OrthoFinder output from all 47 species
AT2G22780 PMDH1 peroxisomal NAD-malate dehydrogenase 1 0.02 OrthoFinder output from all 47 species
AT5G09660 PMDH2 peroxisomal NAD-malate dehydrogenase 2 0.15 OrthoFinder output from all 47 species
Adi_g012305 mMDH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01101 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.08 OrthoFinder output from all 47 species
Ala_g01385 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.07 OrthoFinder output from all 47 species
Als_g06082 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.08 OrthoFinder output from all 47 species
Aob_g01466 mMDH1 mitochondrial NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Aob_g07797 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
Aop_g00482 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.16 OrthoFinder output from all 47 species
Aspi01Gene69164.t1 PMDH1, Aspi01Gene69164 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g02437 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.08 OrthoFinder output from all 47 species
Ceric.28G009700.1 PMDH1, Ceric.28G009700 peroxisomal NAD-dependent malate dehydrogenase &... 0.11 OrthoFinder output from all 47 species
Dac_g23577 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.05 OrthoFinder output from all 47 species
Dcu_g01037 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
Dde_g20852 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
Ehy_g00867 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.04 OrthoFinder output from all 47 species
GSVIVT01036965001 PMDH1 Lipid metabolism.lipid degradation.fatty acid... 0.13 OrthoFinder output from all 47 species
Gb_00793 PMDH1 peroxisomal NAD-dependent malate dehydrogenase 0.07 OrthoFinder output from all 47 species
LOC_Os03g56280.1 PMDH1, LOC_Os03g56280 peroxisomal NAD-dependent malate dehydrogenase 0.13 OrthoFinder output from all 47 species
LOC_Os07g43700.2 MDH, LOC_Os07g43700 malate dehydrogenase component of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Lfl_g01023 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.09 OrthoFinder output from all 47 species
MA_87937g0010 PMDH1 peroxisomal NAD-dependent malate dehydrogenase 0.09 OrthoFinder output from all 47 species
Mp2g08440.1 PMDH1 peroxisomal NAD-dependent malate dehydrogenase 0.08 OrthoFinder output from all 47 species
Msp_g06714 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.12 OrthoFinder output from all 47 species
Ore_g20188 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
Pir_g12090 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.12 OrthoFinder output from all 47 species
Pnu_g00639 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.04 OrthoFinder output from all 47 species
Ppi_g02813 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.16 OrthoFinder output from all 47 species
Ppi_g28680 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.03 OrthoFinder output from all 47 species
Ppi_g61921 MDH malate dehydrogenase component of AAA-ATPase motor... 0.13 OrthoFinder output from all 47 species
Sam_g16454 No alias peroxisomal NAD-dependent malate dehydrogenase &... 0.1 OrthoFinder output from all 47 species
Solyc01g106480.4.1 PMDH1, Solyc01g106480 peroxisomal NAD-dependent malate dehydrogenase 0.06 OrthoFinder output from all 47 species
Solyc03g115990.3.1 MDH, Solyc03g115990 malate dehydrogenase component of AAA-ATPase motor complex 0.02 OrthoFinder output from all 47 species
Solyc07g062650.4.1 mMDH1, Solyc07g062650 mitochondrial NAD-dependent malate dehydrogenase 0.02 OrthoFinder output from all 47 species
Spa_g10807 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.16 OrthoFinder output from all 47 species
Tin_g01665 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.07 OrthoFinder output from all 47 species
Zm00001e005838_P001 PMDH1, Zm00001e005838 peroxisomal NAD-dependent malate dehydrogenase 0.08 OrthoFinder output from all 47 species
Zm00001e035622_P001 MDH, Zm00001e035622 Malate dehydrogenase, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001236 Lactate/malate_DH_N 46 188
IPR022383 Lactate/malate_DH_C 190 353
No external refs found!