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  5. Ehy_g20973

Ehy_g20973 (CAB4, LHCA4)


Aliases : CAB4, LHCA4

Description : component *(LHCa4) of LHC-I complex & original description: none


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g20973
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264770 CAB4, LHCA4,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
AMTR_s00013p00180670 LHCA2,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 OrthoFinder output from all 47 species
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.03 OrthoFinder output from all 47 species
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.03 OrthoFinder output from all 47 species
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.03 OrthoFinder output from all 47 species
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.06 OrthoFinder output from all 47 species
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.04 OrthoFinder output from all 47 species
Adi_g001938 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g113731 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g11818 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.04 OrthoFinder output from all 47 species
Ala_g00950 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.05 OrthoFinder output from all 47 species
Ala_g00983 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g21633 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03556 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Als_g07082 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39064 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08832 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10644 LHCA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11303 LHCA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12635 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Aob_g13294 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17482 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01073 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12147 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13138 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61720.t1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013231 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g06305 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15852 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g36933 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.21G064400.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.07 OrthoFinder output from all 47 species
Ceric.22G073900.1 LHCA2, Ceric.22G073900 component *(LHCa2) of LHC-I complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.28G031700.1 LHCA2, Ceric.28G031700 component *(LHCa2) of LHC-I complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G037200.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.06 OrthoFinder output from all 47 species
Ceric.33G046000.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Cre06.g272650 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Cre06.g278213 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.05 OrthoFinder output from all 47 species
Cre10.g425900 CAB4, LHCA4 Chlorophyll a-b binding protein 4, chloroplastic... 0.04 OrthoFinder output from all 47 species
Cre10.g452050 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
Cre16.g687900 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
Dac_g04068 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g04958 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13497 LHCA2 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g21646 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Dcu_g02371 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g09352 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.04 OrthoFinder output from all 47 species
Dcu_g29671 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g34548 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45197 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02029 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08226 LHCA5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16731 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01007988001 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
GSVIVT01009498001 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
GSVIVT01010483001 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
GSVIVT01015045001 LHCA2*1, LHCA6 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Gb_32082 LHCA2 component LHCa2 of LHC-I complex 0.04 OrthoFinder output from all 47 species
LOC_Os07g38960.1 LHCA2, LOC_Os07g38960 component LHCa2 of LHC-I complex 0.05 OrthoFinder output from all 47 species
LOC_Os08g33820.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.04 OrthoFinder output from all 47 species
LOC_Os09g26810.1 LOC_Os09g26810 component LHCa6 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Len_g05165 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09864 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12015 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17260 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55433 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34099 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
MA_65346g0010 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp3g07840.1 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Mp8g13180.1 LHCA2 component LHCa2 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Msp_g01556 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04666 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g00555 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g05658 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g07782 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07783 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43266 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43267 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17334 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19526 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Pir_g19768 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08290 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c20_23240V3.1 LHCA2, Pp3c20_23240 photosystem I light harvesting complex gene 2 0.02 OrthoFinder output from all 47 species
Pp3c4_11854V3.1 LHCA5, Pp3c4_11854 photosystem I light harvesting complex gene 5 0.02 OrthoFinder output from all 47 species
Ppi_g12016 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18284 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013113 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016013 LHCA2 component *(LHCa2) of LHC-I complex & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017225 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g10927 No alias component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16961 No alias component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18948 No alias linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Sam_g40409 No alias component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Smo403333 LHCA5 Photosystem I chlorophyll a/b-binding protein 5,... 0.03 OrthoFinder output from all 47 species
Smo446130 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Solyc03g115900.4.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Solyc06g069730.3.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Solyc07g022900.4.1 LHCA5, Solyc07g022900 component LHCa5 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Solyc10g006230.3.1 LHCA2, Solyc10g006230 component LHCa2 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Spa_g04945 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g04946 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08046 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.05 OrthoFinder output from all 47 species
Spa_g29531 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04383 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10537 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004129_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Zm00001e015945_P001 LHCA5, Zm00001e015945 component LHCa5 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Zm00001e022453_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Zm00001e035349_P002 LHCA2, Zm00001e035349 component LHCa2 of LHC-I complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 90 249
No external refs found!