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Aliases : SPT42
Description : component *(SPT4) of SPT4/5 transcription elongation factor complex & original description: none
Gene families : OG0004229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004229_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Adi_g074024 | |
| Cluster | HCCA: Cluster_316 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Dcu_g42751 | SPT42 | component *(SPT4) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g22080 | No alias | component *(SPT4) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g43060.1 | SPT42, LOC_Os07g43060 | component SPT4 of SPT4/5 transcription elongation factor complex | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g35747 | SPT42 | component *(SPT4) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g42092 | No alias | component *(SPT4) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c6_2640V3.1 | SPT42, Pp3c6_2640 | SPT4 homolog 2 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g00113 | No alias | component *(SPT4) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Smo80011 | SPT42 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004140 | dephospho-CoA kinase activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015936 | coenzyme A metabolic process | IEP | HCCA |
| BP | GO:0015937 | coenzyme A biosynthetic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0033866 | nucleoside bisphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034030 | ribonucleoside bisphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034033 | purine nucleoside bisphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022800 | Spt4/RpoE2_Znf | 19 | 95 |
| No external refs found! |