1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g060882

Adi_g060882


Description : stability factor *(PPR10) & original description: none


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g060882
Cluster HCCA: Cluster_371

Target Alias Description ECC score Gene Family Method Actions
Als_g02403 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24126 No alias stability factor *(PPR10) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07205 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056580 No alias stability factor *(PPR10) & original description: CDS=1-1563 0.03 OrthoFinder output from all 47 species
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.02 OrthoFinder output from all 47 species
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
LOC_Os07g40120.1 LOC_Os07g40120 plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species
Len_g15746 EMB2453, ATPPR5 stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.01 OrthoFinder output from all 47 species
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
Mp8g08650.1 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
Sam_g13568 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g107320.3.1 Solyc01g107320 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 693 723
IPR002885 Pentatricopeptide_repeat 592 618
IPR002885 Pentatricopeptide_repeat 188 248
IPR002885 Pentatricopeptide_repeat 259 283
IPR002885 Pentatricopeptide_repeat 363 423
IPR002885 Pentatricopeptide_repeat 294 352
IPR002885 Pentatricopeptide_repeat 445 492
IPR002885 Pentatricopeptide_repeat 725 773
IPR002885 Pentatricopeptide_repeat 515 563
IPR002885 Pentatricopeptide_repeat 621 664
No external refs found!