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  5. Ehy_g12076

Ehy_g12076 (PTAC5)


Aliases : PTAC5

Description : cofactor of plastid-encoded RNA polymerase *(TAC5) & original description: none


Gene families : OG0007664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g12076

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00113950 PTAC5,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
AT4G13670 PTAC5 plastid transcriptionally active 5 0.04 OrthoFinder output from all 47 species
Als_g62119 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Aob_g11480 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
Aop_g30535 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Cba_g07919 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Ceric.04G086900.1 PTAC5, Ceric.04G086900 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.05 OrthoFinder output from all 47 species
Dcu_g12562 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.06 OrthoFinder output from all 47 species
Dde_g24577 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01029077001 PTAC5 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Lfl_g15814 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
MA_692g0010 PTAC5 TAC5 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g19386 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Ore_g08855 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.05 OrthoFinder output from all 47 species
Pnu_g19859 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Pp3c19_7640V3.1 PTAC5, Pp3c19_7640 plastid transcriptionally active 5 0.04 OrthoFinder output from all 47 species
Sam_g06443 No alias cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.05 OrthoFinder output from all 47 species
Smo404832 PTAC5 RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
Solyc09g091830.4.1 PTAC5, Solyc09g091830 TAC5 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Spa_g18327 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.06 OrthoFinder output from all 47 species
Zm00001e041226_P002 PTAC5, Zm00001e041226 TAC5 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 232 290
No external refs found!