Aliases : ATCAF1, CAF1
Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none
Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00056p00043140 | ATCAF1, CAF1,... | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00340p00004320 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.05 | OrthoFinder output from all 47 species | |
AT2G20020 | ATCAF1, CAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | 0.05 | OrthoFinder output from all 47 species | |
Aev_g10007 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g19873 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g14385 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g08998 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g06914 | CAF2, ATCAF2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.11G050500.1 | CAF2, ATCAF2,... | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.13G007400.1 | CAF2, ATCAF2,... | not classified & original description: pacid=50635785... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.13G021700.1 | ATCAF1, CAF1,... | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g14796 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g25068 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01015331001 | ATCAF1, CAF1 | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g21990.1 | CAF2, ATCAF2,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g31110.1 | ATCAF1, CAF1,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g16965 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
MA_54539g0010 | No alias | CRS2-associated factor 2, mitochondrial OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
MA_757065g0010 | CAF2, ATCAF2 | CRS2-associated factor 2, chloroplastic OS=Oryza sativa... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g31805 | CAF2, ATCAF2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g24662 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g30110 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g02160 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g08767 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g26827 | No alias | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g018240.4.1 | ATCAF1, CAF1,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g06701 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g31214 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g51985 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0019842 | vitamin binding | IEP | HCCA |
MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
MF | GO:0032977 | membrane insertase activity | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140104 | molecular carrier activity | IEP | HCCA |
MF | GO:0140359 | ABC-type transporter activity | IEP | HCCA |
MF | GO:0140597 | protein carrier chaperone | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
No external refs found! |