Sacu_v1.1_s0198.g025553 (SIGB, SIG2, SIGA, SIG1, RPOD1)

Aliases : SIGB, SIG2, SIGA, SIG1, RPOD1

Description : basal Sigma-type transcription factor & original description: CDS=1-1473

Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0198.g025553
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00072720	SIGF, SIG6,...	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
AMTR_s00011p00266100	SIGB, SIG2,...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00025p00248060	SIGD, SIG4,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.04	OrthoFinder output from all 47 species
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.04	OrthoFinder output from all 47 species
AT3G53920	SIGC, SIG3	RNApolymerase sigma-subunit C	0.03	OrthoFinder output from all 47 species
Adi_g013131	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g078223	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Adi_g088986	ATSIG1, SIGB,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g01395	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g07913	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g02468	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g20576	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g27390	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Als_g61402	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aob_g09016	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g09018	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g09050	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene43773.t1	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000670	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0178.g056190	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g03997	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g05885	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g10475	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G083900.1	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cre03.g194950	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
Dac_g10853	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g03021	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g05693	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dde_g24733	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g06928	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g14118	SIGF, SIG6,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g20636	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01019326001	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.07	OrthoFinder output from all 47 species
GSVIVT01024261001	SIGB, SIG2,...	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
GSVIVT01025717001	SIGF, SIG6,...	RNA biosynthesis.organelle...	0.07	OrthoFinder output from all 47 species
GSVIVT01035330001	SIGC, SIG3	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
Gb_05479	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Gb_05480	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os03g16430.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
LOC_Os08g14450.1	SIGF, SIG6,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
LOC_Os11g26160.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.06	OrthoFinder output from all 47 species
Len_g03332	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Mp4g13380.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Mp7g15030.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Msp_g07421	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Msp_g08661	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g13789	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g21262	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ore_g08024	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ore_g32531	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ore_g33804	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pir_g64419	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g07253	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g06448	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g30557	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ppi_g54639	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13485	No alias	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g19255	No alias	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Smo117159	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
Solyc01g081490.3.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Solyc03g097320.3.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Solyc08g065970.3.1	SIGC, SIG3,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Solyc09g008040.3.1	SIGF, SIG6,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Spa_g16166	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e001198_P005	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species
Zm00001e021420_P001	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Zm00001e021683_P001	SIGB, SIG2,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species
Zm00001e032586_P001	SIGC, SIG3,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	HCCA
MF	GO:0004424	imidazoleglycerol-phosphate dehydratase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0006551	leucine metabolic process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	HCCA
BP	GO:0009098	leucine biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	259	325
IPR007630	RNA_pol_sigma70_r4	432	482

External Links

No external refs found!

Sacu_v1.1_s0198.g025553 (SIGB, SIG2, SIGA, SIG1, RPOD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation