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  5. Sacu_v1.1_s0160.g023855

Sacu_v1.1_s0160.g023855


Description : not classified & original description: CDS=194-1321


Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0160.g023855

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00012640 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.07 OrthoFinder output from all 47 species
AT3G23700 No alias Nucleic acid-binding proteins superfamily 0.05 OrthoFinder output from all 47 species
Aev_g03265 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08286 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g01702 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16549 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.11G080900.1 Ceric.11G080900 not classified & original description: pacid=50596374... 0.06 OrthoFinder output from all 47 species
Cre03.g148950 No alias 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g02753 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g03799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01039 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_13624 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
LOC_Os03g62780.1 LOC_Os03g62780 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g12635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_37826g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g19820.1 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.02 OrthoFinder output from all 47 species
Msp_g04843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30081 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g11144 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006347_P003 Zm00001e006347 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR018664 DUF2103_metal-binding 295 362
IPR003029 S1_domain 102 168
IPR003029 S1_domain 182 258
No external refs found!