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  5. Sacu_v1.1_s0085.g018352

Sacu_v1.1_s0085.g018352


Description : not classified & original description: CDS=139-1758


Gene families : OG0003888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0085.g018352
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT3G49140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g106591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0187.g056741 No alias not classified & original description: CDS=179-1597 0.04 OrthoFinder output from all 47 species
Ceric.1Z114500.1 Ceric.1Z114500 not classified & original description: pacid=50576803... 0.03 OrthoFinder output from all 47 species
GSVIVT01028827001 No alias Uncharacterized protein At3g49140 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os01g67370.1 LOC_Os01g67370 Uncharacterized protein At3g49140 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Len_g40386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33423 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g007590.4.1 Solyc03g007590 Uncharacterized protein At3g49140 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024190_P001 Zm00001e024190 Uncharacterized protein At3g49140 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA

No InterPro domains available for this sequence

No external refs found!