Sacu_v1.1_s0056.g014522 (EMB2247)

Aliases : EMB2247

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: CDS=69-2999

Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0056.g014522
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
AT5G16715	EMB2247	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.04	OrthoFinder output from all 47 species
Aev_g05503	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g21612	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Ceric.08G062000.1	EMB2247, Ceric.08G062000	EC_6.1 ligase forming carbon-oxygen bond & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000402.37	EMB2247	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cre07.g350500	EMB2247	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Dde_g24253	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g01640	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01030776001	EMB2247	Valine--tRNA ligase, chloroplastic/mitochondrial 2...	0.01	OrthoFinder output from all 47 species
Gb_39267	EMB2247	valine-tRNA ligase	0.03	OrthoFinder output from all 47 species
LOC_Os07g06940.1	EMB2247, LOC_Os07g06940	valine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Lfl_g08398	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.04	OrthoFinder output from all 47 species
Mp2g20730.1	EMB2247	valine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Nbi_g13320	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Ppi_g56587	EMB2247	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Sam_g09052	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Solyc12g019100.2.1	EMB2247, Solyc12g019100	Valine--tRNA ligase, chloroplastic/mitochondrial 2...	0.03	OrthoFinder output from all 47 species
Solyc12g019110.3.1	EMB2247, Solyc12g019110	valine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Zm00001e011483_P001	EMB2247, Zm00001e011483	valine-tRNA ligase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0004832	valine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006438	valyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	HCCA
BP	GO:0034755	iron ion transmembrane transport	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	693	837
IPR002300	aa-tRNA-synth_Ia	80	639
IPR019499	Val-tRNA_synth_tRNA-bd	902	966

External Links

No external refs found!

Sacu_v1.1_s0056.g014522 (EMB2247)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation