Sacu_v1.1_s0055.g014355 (ATSIG5, SIG5, SIGE)


Aliases : ATSIG5, SIG5, SIGE

Description : basal Sigma-type transcription factor & original description: CDS=542-2422


Gene families : OG0006267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006267_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0055.g014355

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00253000 ATSIG5, SIG5,... RNA polymerase sigma factor sigE,... 0.02 OrthoFinder output from all 47 species
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.03 OrthoFinder output from all 47 species
Aob_g18205 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g23756 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
LOC_Os05g50930.1 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.04 OrthoFinder output from all 47 species
MA_10428665g0010 ATSIG5, SIG5, SIGE RNA polymerase sigma factor sigE,... 0.02 OrthoFinder output from all 47 species
Mp3g02240.1 ATSIG5, SIG5, SIGE basal transcription factor (Sigma) 0.03 OrthoFinder output from all 47 species
Smo147096 ATSIG5, SIG5, SIGE RNA biosynthesis.organelle... 0.04 OrthoFinder output from all 47 species
Spa_g22251 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Tin_g20273 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e032596_P002 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 376 446
IPR007630 RNA_pol_sigma70_r4 560 613
No external refs found!