Sacu_v1.1_s0046.g013311 (emb2768)

Aliases : emb2768

Description : organellar tyrosine-tRNA ligase & original description: CDS=1-1575

Gene families : OG0006788 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006788_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0046.g013311
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
Adi_g114248	emb2768	organellar tyrosine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08372	emb2768	organellar tyrosine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G083500.1	emb2768, Ceric.02G083500	organellar tyrosine-tRNA ligase & original description:...	0.03	OrthoFinder output from all 47 species
Cre13.g606050	emb2768	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Ehy_g25657	emb2768	organellar tyrosine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01023528001	emb2768	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
MA_766311g0010	emb2768	tyrosine-tRNA ligase	0.04	OrthoFinder output from all 47 species
Mp6g00080.1	emb2768	tyrosine-tRNA ligase	0.04	OrthoFinder output from all 47 species
Msp_g08845	emb2768	organellar tyrosine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g05775	emb2768	organellar tyrosine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g38335	No alias	organellar tyrosine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g008530.1.1	emb2768, Solyc07g008530	tyrosine-tRNA ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002305	aa-tRNA-synth_Ic	96	413
IPR002942	S4_RNA-bd	448	494

External Links

No external refs found!

Sacu_v1.1_s0046.g013311 (emb2768)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation