Sacu_v1.1_s0030.g010330


Description : EC_6.1 ligase forming carbon-oxygen bond & original description: CDS=153-2225


Gene families : OG0004076 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004076_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0030.g010330
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g083887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11980 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.07 OrthoFinder output from all 47 species
Ehy_g07047 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g09178 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Gb_33491 No alias glycine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Nbi_g21506 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Pir_g14962 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g29655 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Smo268427 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Solyc03g118170.3.1 Solyc03g118170 glycine-tRNA ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR000738 WHEP-TRS_dom 20 69
IPR002314 aa-tRNA-synt_IIb 256 334
IPR004154 Anticodon-bd 581 668
No external refs found!