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  5. Azfi_s0093.g043288

Azfi_s0093.g043288


Description : not classified & original description: CDS=1-2142


Gene families : OG0005460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0093.g043288
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G19520 NFD5 pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
MA_82129g0010 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Nbi_g13165 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
CC GO:0009317 acetyl-CoA carboxylase complex IEP HCCA
CC GO:0009360 DNA polymerase III complex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 382 411
IPR002885 Pentatricopeptide_repeat 561 585
IPR002885 Pentatricopeptide_repeat 530 553
IPR002885 Pentatricopeptide_repeat 422 446
IPR002885 Pentatricopeptide_repeat 491 519
IPR002885 Pentatricopeptide_repeat 453 479
No external refs found!