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  5. Azfi_s0045.g029768

Azfi_s0045.g029768


Description : scaffold component *(Nop58) of snoRNP rRNA methylation complex & original description: CDS=176-1981


Gene families : OG0004943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0045.g029768
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 OrthoFinder output from all 47 species
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 OrthoFinder output from all 47 species
Adi_g081321 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aop_g13968 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder output from all 47 species
Dac_g17149 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Dcu_g04026 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Dde_g01696 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01021905001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
LOC_Os03g22740.1 LOC_Os03g22740 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.05 OrthoFinder output from all 47 species
Lfl_g06618 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
MA_513089g0010 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.02 OrthoFinder output from all 47 species
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.06 OrthoFinder output from all 47 species
Nbi_g12240 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017383 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Sam_g19587 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Solyc09g083080.4.1 Solyc09g083080 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.07 OrthoFinder output from all 47 species
Spa_g15033 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Tin_g28216 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Zm00001e032234_P001 Zm00001e032234 Probable nucleolar protein 5-2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e038207_P001 Zm00001e038207 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 2 65
IPR002687 Nop_dom 166 394
No external refs found!