Ceric.35G054400.1 (LUG, RON2, Ceric.35G054400)


Aliases : LUG, RON2, Ceric.35G054400

Description : component *(LUG/LUH) of transcriptional co-repressor complex & original description: pacid=50581220 polypeptide=Ceric.35G054400.1.p locus=Ceric.35G054400 ID=Ceric.35G054400.1.v2.1 annot-version=v2.1


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.35G054400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00094620 LUG, RON2,... RNA biosynthesis.transcriptional repression.LUG... 0.04 OrthoFinder output from all 47 species
Adi_g011009 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Aop_g22303 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.110 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g39318 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Ehy_g07081 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Ehy_g08626 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
GSVIVT01035791001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.04 OrthoFinder output from all 47 species
Gb_02946 LUG, RON2 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Gb_10347 LUG, RON2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g08190.1 LUG, RON2, LOC_Os01g08190 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
LOC_Os01g42260.1 LUG, RON2, LOC_Os01g42260 transcriptional co-repressor (LUG) 0.07 OrthoFinder output from all 47 species
LOC_Os03g64300.1 LUH, LOC_Os03g64300 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
MA_57453g0010 LUH transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
MA_65863g0010 LUH transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Ore_g06587 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Ppi_g06991 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Sam_g11604 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Sam_g13678 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.06 OrthoFinder output from all 47 species
Solyc02g078000.2.1 LUH, Solyc02g078000 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Zm00001e016200_P001 LUH, Zm00001e016200 transcriptional co-repressor (LUG) 0.04 OrthoFinder output from all 47 species
Zm00001e020658_P005 LUG, RON2, Zm00001e020658 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Zm00001e027845_P004 LUG, RON2, Zm00001e027845 transcriptional co-repressor (LUG) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 752 810
IPR001680 WD40_repeat 653 688
IPR001680 WD40_repeat 612 646
IPR001680 WD40_repeat 696 731
IPR006594 LisH 10 35
No external refs found!