Ceric.26G039000.1 (ATATM1, ATM1, Ceric.26G039000)

Aliases : ATATM1, ATM1, Ceric.26G039000

Description : transport protein ATM of mitochondrial ISC system export machinery & original description: pacid=50599380 polypeptide=Ceric.26G039000.1.p locus=Ceric.26G039000 ID=Ceric.26G039000.1.v2.1 annot-version=v2.1

Gene families : OG0002075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002075_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.26G039000.1

Target	Alias	Description	ECC score	Gene Family Method
Aev_g11140	ATATM1, ATM1	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g25154	ATATM1, ATM1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g28533	ATATM1, ATM1	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0427.g069288	ATATM3, STA1, ATM3	not classified & original description: CDS=1-1653	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000857.17	ATATM3, STA1, ATM3	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Len_g30770	ATATM1, ATM1	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g16586	ATATM1, ATM1	subfamily ABCB transporter & original description: none	0.09	OrthoFinder output from all 47 species
Mp1g19940.1	ATATM1, ATM1	transport protein ATM of mitochondrial ISC system export...	0.05	OrthoFinder output from all 47 species
Ore_g09224	ATATM3, STA1, ATM3	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g17300	ATATM3, STA1, ATM3	subfamily ABCB transporter & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015317	ATATM1, ATM1	subfamily ABCB transporter & original description: CDS=168-2231	0.06	OrthoFinder output from all 47 species
Sam_g52223	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo75404	ATATM1, ATM1	Solute transport.primary active transport.ABC...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	445	530
IPR011527	ABC1_TM_dom	106	383

External Links

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Ceric.26G039000.1 (ATATM1, ATM1, Ceric.26G039000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation