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  5. Ceric.15G051600.1

Ceric.15G051600.1 (Ceric.15G051600)


Aliases : Ceric.15G051600

Description : RNA helicase component *(SKI2) of SUPERKILLER regulation complex & original description: pacid=50639937 polypeptide=Ceric.15G051600.1.p locus=Ceric.15G051600 ID=Ceric.15G051600.1.v2.1 annot-version=v2.1


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.15G051600.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 HEN2,... RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.06 OrthoFinder output from all 47 species
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 OrthoFinder output from all 47 species
Adi_g022453 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.06 OrthoFinder output from all 47 species
Aev_g01540 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.06 OrthoFinder output from all 47 species
Ala_g07168 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Ala_g07801 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.07 OrthoFinder output from all 47 species
Als_g01202 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Aob_g06073 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Aop_g09338 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Aop_g27842 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15979.t1 HEN2, Aspi01Gene15979 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015921 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023708 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Azfi_s0100.g044290 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Cre06.g289950 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder output from all 47 species
Cre11.g482483 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Dcu_g18967 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.11 OrthoFinder output from all 47 species
Dde_g30301 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Dde_g31250 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ehy_g14599 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Ehy_g24206 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
GSVIVT01024809001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01032255001 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.06 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Len_g58854 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
Lfl_g02309 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Lfl_g38626 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.07 OrthoFinder output from all 47 species
MA_10437094g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 OrthoFinder output from all 47 species
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 OrthoFinder output from all 47 species
Mp4g03900.1 HEN2 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Msp_g15177 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Msp_g19222 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Nbi_g03153 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ore_g41022 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Pir_g01063 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Pir_g18687 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
Ppi_g57471 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Sam_g10538 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Sam_g14012 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.04 OrthoFinder output from all 47 species
Smo403447 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
Smo79650 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
Solyc01g103080.3.1 Solyc01g103080 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Solyc06g005990.4.1 Solyc06g005990 DExH-box ATP-dependent RNA helicase DExH11... 0.04 OrthoFinder output from all 47 species
Solyc12g017860.3.1 HEN2, Solyc12g017860 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
Spa_g08781 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Spa_g11434 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Spa_g29638 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.08 OrthoFinder output from all 47 species
Tin_g11923 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.09 OrthoFinder output from all 47 species
Tin_g21647 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.05 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.06 OrthoFinder output from all 47 species
Zm00001e036710_P004 Zm00001e036710 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR040801 Ski2_N 128 222
IPR011545 DEAD/DEAH_box_helicase_dom 360 505
IPR025696 rRNA_proc-arch_dom 837 1144
IPR012961 Ski2/MTR4_C 1171 1340
No external refs found!