1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.05G054200.1

Ceric.05G054200.1 (Ceric.05G054200)


Aliases : Ceric.05G054200

Description : tRNA 4-demethylwyosine synthase *(TYW1) & original description: pacid=50579179 polypeptide=Ceric.05G054200.1.p locus=Ceric.05G054200 ID=Ceric.05G054200.1.v2.1 annot-version=v2.1


Gene families : OG0006618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006618_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.05G054200.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g35438 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.04 OrthoFinder output from all 47 species
Cre14.g623300 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.05 OrthoFinder output from all 47 species
Dac_g22151 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os03g56390.1 LOC_Os03g56390 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.08 OrthoFinder output from all 47 species
Lfl_g35032 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.05 OrthoFinder output from all 47 species
MA_183671g0010 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 OrthoFinder output from all 47 species
Mp5g22650.1 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.06 OrthoFinder output from all 47 species
Ore_g07642 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13888 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.05 OrthoFinder output from all 47 species
Smo169856 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.07 OrthoFinder output from all 47 species
Solyc04g080340.3.1 Solyc04g080340 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.06 OrthoFinder output from all 47 species
Tin_g22027 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e005848_P001 Zm00001e005848 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0010181 FMN binding IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008254 Flavodoxin/NO_synth 132 271
IPR007197 rSAM 431 612
IPR013917 tRNA_wybutosine-synth 615 678
No external refs found!