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  5. Dcu_g23057

Dcu_g23057 (UBP12)


Aliases : UBP12

Description : not classified & original description: none


Gene families : OG0005085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g23057
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
Adi_g107348 UBP12 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g33294 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06394 UBP12 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Als_g57720 UBP12 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aob_g29816 UBP12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29880 UBP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23681.t1 Aspi01Gene23681 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23682.t2 UBP12, Aspi01Gene23682 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010362 UBP12 not classified & original description: CDS=350-7828 0.03 OrthoFinder output from all 47 species
Cba_g11482 UBP13 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.15G071100.1 UBP12, Ceric.15G071100 not classified & original description: pacid=50640759... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021281.14 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g12126 UBP12 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g18112 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_35991 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g13952 UBP13 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g11501 UBP12 not classified & original description: none 0.1 OrthoFinder output from all 47 species
MA_10436921g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_17762g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_6934376g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7843052g0010 UBP13 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g43540 UBP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020740 UBP12 not classified & original description: CDS=294-7754 0.06 OrthoFinder output from all 47 species
Smo447032 UBP12 Protein degradation.peptidase families.cysteine-type... 0.08 OrthoFinder output from all 47 species
Spa_g09112 UBP12 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g13986 UBP12 not classified & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 1618 1986
IPR021905 DUF3517 2181 2462
No external refs found!