Dcu_g08248

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g08248

Target	Alias	Description	ECC score	Gene Family Method
AT3G53230	No alias	ATPase, AAA-type, CDC48 protein	0.02	OrthoFinder output from all 47 species
AT3G56690	CIP111	Cam interacting protein 111	0.02	OrthoFinder output from all 47 species
Ala_g07270	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g09138	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g20264	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g33031	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Als_g39925	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g33182	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02580	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.10	No alias	Cell division control protein 48 homolog D...	0.01	OrthoFinder output from all 47 species
Cre06.g269950	No alias	Cell division control protein 48 homolog E...	0.04	OrthoFinder output from all 47 species
Cre17.g700300	CDC48B	Cell division control protein 48 homolog B...	0.01	OrthoFinder output from all 47 species
GSVIVT01007689001	No alias	Cell division cycle protein 48 homolog OS=Glycine max	0.02	OrthoFinder output from all 47 species
GSVIVT01010343001	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species
GSVIVT01025723001	No alias	Cell division control protein 48 homolog D...	0.05	OrthoFinder output from all 47 species
GSVIVT01025783001	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_24470	No alias	platform ATPase (CDC48)	0.04	OrthoFinder output from all 47 species
Len_g32887	No alias	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
MA_10429450g0010	No alias	Cell division control protein 48 homolog D...	0.03	OrthoFinder output from all 47 species
Mp2g12350.1	emb1354, CDC48C	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp3g20500.1	CDC48B	Cell division control protein 48 homolog B...	0.01	OrthoFinder output from all 47 species
Ore_g03860	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01985	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g16719	No alias	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g068330.4.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Spa_g39328	No alias	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e021405_P001	CIP111, Zm00001e021405	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019781	NEDD8 activating enzyme activity	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042176	regulation of protein catabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0045116	protein neddylation	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	249	378
IPR003959	ATPase_AAA_core	522	655
IPR041569	AAA_lid_3	677	717
IPR041569	AAA_lid_3	401	443
IPR004201	Cdc48_dom2	136	199
IPR003338	CDC4_N-term_subdom	34	115

External Links

No external refs found!

Dcu_g08248

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation