Dcu_g06113 (TWN3, RPS9)

Aliases : TWN3, RPS9

Description : component *(uS9c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002624 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002624_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g06113
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AT1G74970	TWN3, RPS9	ribosomal protein S9	0.12	OrthoFinder output from all 47 species
Adi_g023331	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Adi_g023332	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ala_g09988	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Aop_g12650	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Aspi01Gene37934.t1	TWN3, RPS9,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0060.g034759	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.15G045500.1	TWN3, RPS9,...	component *(uS9c) of small plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020912.92	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
Cre02.g106750	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g14878	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g12612	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g04376	TWN3, RPS9	not classified & original description: none	0.09	OrthoFinder output from all 47 species
GSVIVT01009628001	TWN3, RPS9	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_29571	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Gb_39922	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Spinacia...	0.08	OrthoFinder output from all 47 species
LOC_Os03g55930.1	TWN3, RPS9,...	component psRPS9 of small ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Len_g10588	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Lfl_g06364	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
MA_141286g0010	TWN3, RPS9	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_18349g0020	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Spinacia...	0.13	OrthoFinder output from all 47 species
Mp3g01740.1	TWN3, RPS9	component psRPS9 of small ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Nbi_g00484	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Pnu_g19238	TWN3, RPS9	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020559	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sam_g15079	No alias	component *(uS9c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g15080	No alias	component *(uS9c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Smo17067	TWN3, RPS9	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea	0.04	OrthoFinder output from all 47 species
Solyc04g079790.3.1	TWN3, RPS9,...	component psRPS9 of small ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Spa_g04655	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Spa_g04656	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Spa_g31093	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Tin_g00437	TWN3, RPS9	component *(uS9c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Zm00001e005809_P002	TWN3, RPS9,...	component psRPS9 of small ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	87	208

External Links

No external refs found!

Dcu_g06113 (TWN3, RPS9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation